I am solving a Hidden Markov Model (HMM) problem for DNA sequences.
Given:
1. DNA sequence
ATGGGCTCCTCCGCCATCACCGTGAGCTTCCTCCTCTTTCTGGCATTTCAGCTCCCAGGGCAAACAGGAGCAAATCCCGTGTATGGCTCTGTGTCCAATGCAGACCTGATGGATTTCAAGTAAAAG
2. State-transition matrix (21x6)
State A T G C End
0 1...