When you say welded whole, I'm assuming you mean that the whole beam is welded to the column, which you could design as rigid. Here's the concept, if you don't have bracing, you fix your main connections in the directions where bracing doesn't exist. The reason you do this is to make sure that your connection can handle the moment. There was a time when engineers would predict the "fixability" of a connection, saying that it would have a certain percentage of rigidness. Then the majority of engineers decided to change that to either pinned or fixed, this way its much safer. If everything is fixed on a complex structure, your results will not give you the proper beam and connection loads, then the results will show that there is little or no moment transferred to the base of your structure, which in turn is not what one should assume. Many engineers that I have worked with like to pin their base on pipe racks and etc, however I think this should only be used when determining instabilities. It's ultimately all about where you want your moment to be transferred.