Q1. In a high voltage substation is it standard practice to run a ground conductor the entire length of cable trench?
R1. Yes, it is convenient to run the ground conductor for additional protection. However, this is not a universal practice across the power industry. See additional info in the thread238-455845.
Q2. In a high voltage substation are potential transformers typically bonded to the ground grid?
R2. Yes, usually the secondary and the chassis of the PT is grounded and bonded to the substation ground grid.