When you said you changed the "primary" filters did you really mean the CAT engine mounted filters? These are normally referred to as the secondary filters and your Racors would be considered the primary filters.
The only real way to service the engine mounted fuel pressure sensors is with the CAT computer based service tool, called CAT ET. Frankly if you're on a yacht that travels around quite a bit having a customer version of ET would be in your best interest.
With ET connected you would go to the status menu and with the engine stopped first observe the inlet and outlet fuel pressures, since these are absolute pressure sensors with the engine stopped they should both read about 14.6 PSI. If not, there is a calibration procedure that can be accomplished by using the service menu in ET, requires the engine not running and the atmospheric sensor to be working correctly.
Your other option is to remove both sensors, and connect up a known pressure source, like a calibration hand pump, and observe the readings on the electronic gauge panel (if installed).
There was a known issue with fuel pressure sensors and ECM flash files a few years ago, you may want to check with your CAT dealer to see if your engines fall into the serial number ranges affected.
Something else you may need to know, depending on the age of your engines, they have been originally fitted with 10 micron secondary fuel filters. The old part number now changes to to 2 micron filter that has become the currect CAT standard for electronic unit injected engines. I've had quite a few customers over the past two years complaining of poor secondary fuel filter life, not realizing the filter element has changed. Recently ran into this on a research vessel that had a large stock of older filters they finally got thru, and started seeing shortened life after changing to the new part number.
Personally I think a motor yacht that can afford an engineer ought to have the primary service tool for the main engines on board. Your local CAT dealer can set you up with a customer version of ET, does everything the dealer version does except functions that require a factory password, like a power rerate.
Hope that helps,
Mike L.