OK - in the future, when asked for the version, we know that it's V5 - but you need to give the answer as V5R(something). You can find this info by going to Help -> "about Catia V5".
It sounds to me like the problem with your solid, is that you have somehow, unintentionally, gone back and retroactively assigned a value of zero to the pad.1, or whatever feature houses your counterbore. Or, there may be another error that causes the feature to not be recognized. These things can occur if you insert operations in the tree after initial creation, or if you accidentally delete something.
In my opinion, you should probably make a copy of this model, and then start tearing the copy apart, step by step, until you see something that you recognize. You may have to tear it apart forward to backward, backward to forward, or any combination of steps in-between. Hope your model isn't too complicated.
If you still have a problem, perhaps you could post an image of the model and the tree.
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