Details depending on what small stream and small intake actually describes, climatic (frost?, tropic?) and quality of water and stream velocity (changing conditions?)
Intake could be everything from plastic hose (pipeline) hanging free to intake protected by structural well.
General:
a) Coarse 'cage' protected (3-5mm light openings?) plastic pipeline intake end.
b) Checkvalve mounted in pipeline opening.
c) Do not forget that fine particles (silt, clay) could cause problems and require cleaning in reservoir and clog or damage pumps, valves and spreaders if not avoided. Try, if necessary, submerged 'well' construction or two-chamber solution with your pipe intake well above bottom, and dimensions selected such that flow is slow enough and 'labyrinted with thresholds' to allow silt or particles to set. Could for instance be a kind of 'holed pipeline in holed pipeline staked into bottom construction'. Extra fine-filter before spreaders?
Once you have control of coarse and fine particles the rest can be solved by standard components.
Do not forget to empty the system, and regulary test-run if long standstills.
Intake pump selection even then to allow for particles (fine and coarser) in intake water.