As far as thermodynamics goes: Wankel engines and gasoline piston engines both adhere to the Otto-cycle.
So, speeding up the combustion at low loads will improve combustion in both piston as well as a Wankel engine, because it will adhere closer to the ideal Otto-cycle.
In a Wankel engine it will create bigger gains because the extremely high surface area will cool the gases even more the longer the combustion takes.
Also, one other issue with the Wankel engines is the moving combustion chamber, which seperates the heavier gasoline molecules from the lighter air molecules and enrichens one end of the combustion chamber, which obviously also worsens the slower the combustion. This should indeed be less of an issue with hydrogen.
Keep in mind: The Mazda 787B winning Le Mans 1991 with a naturally aspirated Wankel engine did not have a reduced fuel economy compared to its turbocharged piston driven counterparts even though the Wankel engines are generally not known to be economic. This is related to the fact that economy of Wankel engines suffer particularly at low loads and race cars are hardly driven at low loads.
On the other hand though, pumping losses do not really exist with a Wankel engine, because the rotor doesn't work against any pressure in a crank housing. So reducing the pumping losses by opening the throttle and leaning the mixture will not generate the same benefits with a Wankel engine as with a piston engine.
I wish Mazda would release some data regarding the combination of driving its gasoline/hydrogen RX-8 on mainly gasoline and use hydrogen just to speed up the gasoline combustion particularly at low loads. (Obviously they won't, because this was and is not the goal of their project).