Ah, I see now.
This can certainly be modeled in Pro/E (helix along a curve method) as you have likely already done. But part flexibility "breaks the rules" of motion analysis in Pro/E.
Depending on what you are trying to get out of the analysis, you may be able to use BMX to perform a sensitivity study, provided that the trajectory curve is modeled such that you can emulate it's motion by changing a few dimensions.
Alternatively (this is mostly if you want to make a video), you can set a relation (i.e. X=X+1) to have the duct "move" with each regeneration, then snap off a JPEG. Mapkeying this really helps.
Good luck!