the compressor reps statement is accurate provided that inlet conditions are steady (i.e. not transient). changing inlet conditions will vary capacity or amount of gas entering compression process. again, i fail to understand your 2nd and 3rd sentences.
thinking about them though....
perhaps you are referring to the compressor performance based curves which are valid on certain inlet conditions. changing inlet conditions will simply cause a shift (up/down or left/right) in performance curves.
another analogy...
i am certain you've used a hand operated compressor (not a tire pump!) to increase tire pressure in your bike, etc. depending upon make/model (i.e. single-action or double-action), air is drawn into the cylinder and then compressed or squeezed during the compression stroke. although this applies to oscillating/reciprocating compressors, the same applies to rotary units. a fixed amount of gas enter the compression chamber and is squeezed to a higher pressure per stroke. well, changing atmospheric conditions (like an increase in elevation) will change the capacity of these type compressors - with certain assumptions be applied. so, it will take a few more strokes to achieve the desired result. who cares, we all need the exercise...
regarding control system, define the main process variable (i.e. pressure, temperature, or flow) or what parameter is desired to be maintained and define its setpoint. main process variable control is to be achieved by what means (i.e. speed, other control action, etc.)? a change in main process variable results in a change in speed or some other control action. as far as relocating controls, i again recommend investigating the overall plant process (i.e. "getting the big picture"

and not just the dilema your currently experiencing.
my last, long-winded post.
good luck!
-pmover