OK, I now understand the beams are deep enough, there is no need for deflection checks of cracked section.
You are saying the stirrups are OK for gravity but deficient for seismic.
The part I still don't understand - if you can do manual calculations and who you call the designers cannot - why can't you do a complete design as a "go-by", an example of how a typical building should be designed?
A second thing I still don't understand - if these designers are University graduates, why don't they comprehend shear and moment diagrams? That is very basic, something you don't forget even after years of using "black box" software. I have forgotten many things that were studied in University that I have never used at work, but shear and moment are never forgotten.
Perhaps you mean the designers think that the selection of longitudinal reinforcement is of primary importance, and the stirrups are of much less importance. I have reviewed calculations were the designer seems to think beams are very important, and columns and especially footings are much less important - the calculations for those were sloppy and hurried, and full of deficiencies.