Spitfire,
The reason for the cowlings, fuselage, etc. on WWII fighters is to reduce the drag caused by the necessary bits of equipment (engine, pilot, tail structure, etc.). Very little "unnecessary" bits can be found on those planes. Very few aircraft designers add weight/structure without a really good reason for doing so.
Pre-WW1 airplanes had open truss tail booms. They were slow, and designers quickly found that by covering the trusses in fabric they could get quite a bit more speed.
Pre-WW1 planes also had un-cowled engines. NACA did a study that showed that cylinder head cooling could be improved, and drag reduced, by putting a streamlined cowl over the engine (google "NACA cowling").
Pre-WW1 planes had fixed-skid landing gear. Lots of pilots dug big furrows in the ground with the nose of the planes, and so the extra weight of rolling wheels was deemed a good idea (planes that don't crash on every landing can be re-used instead of recycled). Fixed wheels cause more drag than skids, so "spats" (streamlined fairings) were added, to gain a bit less drag and bit more speed. But the really fast planes were the ones where the wheels could be retracted. Even today, fixed-gear general aviation planes are much slower than retractable-gear versions, even when you compare equal powerplants.
Finally, air-cooled engines are just too bulky, especially if turbo/super-charged. The engine can be made more compact (and thus lighter per unit hp), and the frontal area can be greatly reduced by piping a liquid coolant thru the engine, to somewhere near the back of the fuselage (where all that "empty space" is), and dumping the waste heat there (this is how the P51 did it, and the clever design of the belly scoop makes the radiator produce a fair bit of ramjet thrust, which compensates for the drag of the inlet protrusion. This was probably one of the lowest-drag cooling systems in use in WWII, although the FW190 and TA152 had pretty neat setups as well).
Your OP seems to be taking a snide tone against WWII aircraft designers, although you may not have intended it. The reality is that an awful lot of brainpower, R&D, sweat, and creativity went into the designs of those planes, backed up by thousands of hours of wind-tunnel and flight tests. That the people involved were not dummies should be taken as a "given". If you need any further proof, just plot the top speed of aircraft on a timeline, and look at the huge jump that occurs near 1945, and shortly thereafter.