Aha, it's amazing how much details are unveiled when asked questions!!
The real and best advice is you need to engage some experience professional electrical engineer, starting with one who put this system togehther, to look into the issue. It appears that it is not the breaker. But you still need to remove the breaker and have it tested.
You can exchange a few ideas here but, it is not wise to troubleshoot this type of issue with free advice from strangers.
Having said that, I am still curious:
1. What happens to the amps and volt readings of other two generators? or to the other two gens?
2. What happens when you lockout this generator and let the other two energizes the transformer?