for my 2cents, you're comparing a boeing rivet to two different types, a full CSK (MS20426) and a shallow CSK (NAS1097) ... these are used in different applications for different reasons, so it'd be reasonable to compare to one or the other depending on the head type.
also i'd be really surprised if there is a comparison that you can quote, and that applies to your application.
lastly, a rivet is a rivet, for all their minor differences (apart from head type, that is). i think you get more variation in fatigue performance from the design specifics and the installation processes than you get from using a different manufacturer's rivet.