The solution to your problem depends on the thickness of deck you are using. As one of the previous replies indicated with 3" deck you can look at applying a glue bead to the tongue and groove. The problem with this approach is that all the research I am aware of which has been done on glued diaphragms using a 3M glue that is no longer available.I have seen some specifiers call for Miracle adhesive as a subsitu. I might use Miracle for average wind loading, but personally would not use it for high wind or high seismic areas. I am sure though other designers would disagree with me.
For more information contact Gunnar Brink at Disdero Lumber, 503-239-8888.
If you are dealing with 2" deck gluing is probably not an option because the small size of the deck don't allow you to develop an adequate glue bond.
Regarding nailing of the deck, you are some what on your own. Nailing the deck will increase the diaphragm capacity the problem is how effective it will be. With your Building Official you should be able to submit design calculations to justify your approach.
The major problem you have with this approach is that the lateral deflection of the diaphragm may be larger than you predict. You could contact the technical department at Western Wood Products Association for more information.
Also there are a large number of timber buildings in the field with only 2" decking bracing them, which have performed adequaetly over time.
One final thought, based on my experience, is that the cost of glue and labor involved in gluing the deck up to perform as a diaphragm ussually exceeds the cost of a plywood overlay. You might check on your next project what the additional labor cost are for specifing the additional nailing