Hi,
I think that you did model this structure like plate in bending (that why you got Mxy). In finite element code, we normally convert torsional moment Mxy as effective shear force when applying the torsional clamped boundary condition as allowed by St's Venant Principle. In other words, you can also interpret Mxy as shear force and certainly you should not ignore it (normally unit force per length we have).
Note: Total qx:=qx+Mxy,y , and
Total qy:=qy+Mxy,x
where qx:=Shear force per unit length on face perpendicular to local x axis and vice versa
Mxy,y = d(Mxy)/dy and vice versa where Mxy = Torsional moment per unit length at edge of element which
Mxy = integrate(Txy*z)dz , Txy = shear stress, z is indirection of plate thickness
Please differentiate the physical meaning of shear flow in this case, the Mxy is not a kind of shear flow like thin walled structure in pure torsion but imaginary equivalent shear force on that edge. The relationship between Mx, My, and Mxy could be derived from the system of PDE for plate bending like
Mx,x+Mxy,y-qx = 0,
Myx,y+My,y-qy = 0 and
qx,x+qy,y+p = 0 where p = distributed load on plate
Please excuse, I don't know why we could sum up Mx+My = Mxy??? it makes non sense to do in that way; however, code stated for that, if anyone know the reason please tell me. Thanks